Changes in version 5.1.3 (2025-09-18)                  

  - 18/09/2025
  - Removes sapply warning in predict.downscale

                        Changes in version 5.1.2                        

  - 18/09/2025
  - Corrections to some error checks

                        Changes in version 5.1.1                        

  - 17/09/2025
  - Deleted package info from Downscale-package.Rd as requested by CRAN

                        Changes in version 5.1.0                        

  - 17/09/2025
  - Pull request (villegar) fixes to missing curly brackets in markdown
    docs

                 Changes in version 5.0.0 (2023-05-31)                  

  - 24/05/2023
  - SWITCHING TO terra + sf FROM raster + sp
  -   - Simple reformatting
  -   - optimisation functions renamed to optimisePars**
  -   - email address updated
  -   - minor changes to plots
  -   - error checking refined and moved to single function

                        Changes in version 4.2-1                        

  - 24/11/2021
  -   - Wesbite added to namespace

                 Changes in version 4.2-0 (2021-11-24)                  

  - 24/11/2021
  - downscale resubmission to CRAN. Amongst other minor changes:
  -   - vignettes reworked in markdown
  -   - new refs and a citation added
  -   - on.exit used for resetting par() in plotting function
  -   - exportClasses removed from namespace

                 Changes in version 3.0-1 (2018-08-31)                  

  - 31/08/2018
  -   - Extra information and reference added to description

                        Changes in version 3.0-0                        

  - 30/08/2018
  -   - CITATION file added for JSS article and MEE article added to
        references

                 Changes in version 2.0-3 (2017-08-25)                  

  - 24/08/2017
  -   - CITATION file added for JSS in press article

                 Changes in version 2.0-2 (2017-08-08)                  

  - 08/08/2017
  -   - SpatialPointsDataFrame input added to upgrain helpfile
  -   - downscale helpfile updated

                        Changes in version 2.0-1                        

  - 01/08/2017
  -   - Bug when using SpatialPointsDataFrame corrected

                 Changes in version 2.0-0 (2017-07-31)                  

  - 28/07/2017
  -   - 'lat' and 'lon' replaced with 'x' and 'y' in data frame input
  -   - SpatialPointsDataFrame allowed as input

                 Changes in version 1.2-4 (2016-11-25)                  

  - 24/11/2016
  -   - Bug fixed with error checking in predict.downscale and
        ensemble.downscale

                 Changes in version 1.2-3 (2016-09-30)                  

  - 29/09/2016
  -   - No need to input cell width in hui.downscale with raster or
        upgrain object

                 Changes in version 1.2-2 (2016-08-19)                  

  - 18/08/2016
  -   - Default upgraining method changed to "All_Sampled"
  -   - Names of parameters harmonised with JSS paper

                 Changes in version 1.2-1 (2016-03-11)                  

  - 10/03/2016
  -   - Tutorials checked and adjusted

                        Changes in version 1.2-0                        

  - 09/03/2016
  -   - 'spocc' replaced by 'rgbif' in tutorial

                        Changes in version 1.1-0                        

  - 25/02/2016
  -   - Bug for calculating extent in upgrain function fixed
  -   - upgrain now can return all upgrained rasters
  -   - ExtendRaster function deleted (now obsolete)

                         Changes in version 1.0                         

  - 09/10/2015
  -   - upgrain and upgrain.threshold: 'All Presences' changed to
        'All_Occurrences'
  -   - upgrain and upgrain.threshold: bugs fixed when selecting number
        of scales
  -   - upgrain: plotting now optional
  -   - DataInput: bug in scale of endemism corrected
  -   - Vignettes updated
  -   - plot and predict changed to s3 methods
  -   - help files and examples updated
  -   - Tutorial vignette added
  -   - Raster package now depends
  -   - Argument names harmonised across functions
  -   - Option to specify starting parameters
  -   - More plotting arguments
  -   - Calculates AOO as well as occupancy
  -   - Upgraining vignette added

                         Changes in version 0.7                         

  - 24/04/2015
  -   - Function upgrain.threshold added to explore trade-offs in
        threshold selection
  -   - upgrain now allows thresholds of the four default thresholds

                         Changes in version 0.6                         

  - 14/04/2015
  -   - Plotting added to upgrain function
  -   - Hui model added

                         Changes in version 0.5                         

  - 13/03/2015
  -   - Starting parameters modified
  -   - Corrected plotting when 0's predicted

  - 24/02/2015
  -   - ensemble.predict: means calculated as mean of log occupancies
  -   - ensemble.predict: warning messages for inconsistent results
  -   - package.rd file updated
  -   - ensemble * - different tolerances allowed for modelling and
        predicting

                         Changes in version 0.4                         

  - 05/02/2015
  -   - plot=TRUE added to ensemble plotting
  -   - optimisation of logistic model now includes lower bounds
  -   - optimisation of GNB model now includes upper and lower bounds

                         Changes in version 0.3                         

  - 04/02/2015
  -   - ensemble.downscale function added

                         Changes in version 0.2                         

  - 03/02/2015
  -   - plotting function added and plotting option added to
        'predict.downscale'
  -   - output of function downscale defined as class 'downscale'
  -   - output of function predict.downscale defined as class
        'predict.downscale'
  -   - outputs updated to include observed data for use in the plot
        function
  -   - help files for downscale and predict.downscale updated